SNP Profiles of ICS 16 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
1._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
2._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
3._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
4._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
5._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
6._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
7._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
8._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
9._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
10._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
11._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
12._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
13._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
14._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
15._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
16._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
17._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
18._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
19._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
20._ICS_16	CT	AA	GG	CC	TT	AA	CC	TT	CT	TT	AA	AA	CT	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
1._GC-08-067-1-89	CT	AA	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
2._GC-08-067-1-89	CT	AA	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
3._GC-08-067-1-89	CT	AA	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
4._GC-08-067-1-89	CT	AA	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
5._GC-08-067-1-89	CT	AA	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
6._GC-08-067-1-89	CT	AA	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
7._GC-08-067-1-89	CT	AA	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
8._GC-08-067-1-89	CT	AA	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
9._GC-08-067-1-89	CT	AA	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
10._ICS_16	CT	AA	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
11._ICS_16	CT	AA	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
12._ICS_16	CT	AA	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
13._ICS_16	CT	AA	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
14._ICS_16	CT	AA	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
15._ICS_16	CT	AA	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
16._ICS_16	CT	AA	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
17._ICS_16	CT	AA	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
18._ICS_16	CT	AA	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
19._GC-08-067-1-89	CT	AA	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
20._ICS_16	CT	AA	TT	CC	CG	GT	GG	TT	CC	GG	TT	CC	CC	AG

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X
1._GC-08-067-1-89	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X
2._GC-08-067-1-89	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X
3._GC-08-067-1-89	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X
4._GC-08-067-1-89	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X
5._GC-08-067-1-89	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X
6._GC-08-067-1-89	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X
7._GC-08-067-1-89	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X
8._GC-08-067-1-89	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X
9._GC-08-067-1-89	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X
10._ICS_16	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X
11._ICS_16	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X
12._ICS_16	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X
13._ICS_16	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X
14._ICS_16	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X
15._ICS_16	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X
16._ICS_16	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X
17._ICS_16	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X
18._ICS_16	GG	AA	_	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X
19._GC-08-067-1-89	GG	AA	_	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X
20._ICS_16	GG	TT	CC	AG	CC	AC	CC	GT	AC	AT	GG	X_X	X_X	X_X

Input profile: ICS_16

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 10

Dapeng Zhang, 2016

1._ICS_16 GC-08-067-1-89

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

2._ICS_16 GC-08-067-1-89

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

3._ICS_16 GC-08-067-1-89

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

4._ICS_16 GC-08-067-1-89

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

5._ICS_16 GC-08-067-1-89

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

6._ICS_16 GC-08-067-1-89

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

7._ICS_16 GC-08-067-1-89

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

8._ICS_16 GC-08-067-1-89

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

9._ICS_16 GC-08-067-1-89

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

10._ICS_16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

11._ICS_16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 6

Dapeng Zhang, 2016

12._ICS_16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 7

Dapeng Zhang, 2016

13._ICS_16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 8

Dapeng Zhang, 2016

14._ICS_16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 12

Dapeng Zhang, 2016

15._ICS_16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 1 > FP

Dapeng Zhang, 2016

16._ICS_16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 3 > FP

Dapeng Zhang, 2016

17._ICS_16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 5 > FP

Dapeng Zhang, 2016

18._ICS_16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 9 > FP

Dapeng Zhang, 2016

19._ICS_16 GC-08-067-1-89

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP2

20._ICS_16

65.4 %
39 shared markers

View View all Clone Any

Malaysian Cocoa Board (MCB), Malaysia

Location: Row 1 C0199 2A

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25